Content
- login
- use conda to install packages
login and initiate modules
Refer to the official documentation
significant modules that needs to be loaded
- module load anaconda/3-2023.09
- module load cuda12.0/toolkit
- module load gcc/10.2.0
- module load cudnn8.0-cuda11.1
Check the version of the loaded modules
common issues
CUDA
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/usr/lib/ld or /compiler_compat/ld: cannot find -lcuda: No such file or directory
This is because the system cannnot find libcuda.so which is normally located under /cm/shared/apps/cuda11.1/toolkit/11.7.1/lib64/stubs/.
It can be fixed by adding this to LIBRARY_PATH:
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export LIBRARY_PATH=/cm/shared/apps/cuda11.1/toolkit/11.7.1/lib64/stubs/:$LIBRARY_PATH
CONDA ENV
To activate conda environment in job bash file:
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module load anaconda/3-2023.09
source activate /absolute/path/to/conda/env/
export PATH=/absolute/path/to/conda/env/bin:$PATH
python <python-to-execute.py>